Commit
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61602a9
1
Parent(s):
e526bd3
feat: Add logging warning
Browse files
nucleotide_transformer_downstream_tasks.py
CHANGED
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@@ -15,7 +15,6 @@
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"""Script for the dataset containing the 18 downstream tasks from the Nucleotide
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Transformer paper."""
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import logging
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from typing import List
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import datasets
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@@ -135,7 +134,7 @@ class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
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self, dl_manager: datasets.DownloadManager
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) -> List[datasets.SplitGenerator]:
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train_file = dl_manager.download_and_extract(self.config.task + "/train.fna")
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test_file = dl_manager.download_and_extract(self.config.task + "/test.fna")
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@@ -150,7 +149,7 @@ class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
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# method parameters are unpacked from `gen_kwargs` as given in `_split_generators`
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def _generate_examples(self, file):
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key = 0
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with open(file, "rt") as f:
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fasta_sequences = parse_fasta(f)
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"""Script for the dataset containing the 18 downstream tasks from the Nucleotide
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Transformer paper."""
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from typing import List
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import datasets
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self, dl_manager: datasets.DownloadManager
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) -> List[datasets.SplitGenerator]:
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+
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train_file = dl_manager.download_and_extract(self.config.task + "/train.fna")
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test_file = dl_manager.download_and_extract(self.config.task + "/test.fna")
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# method parameters are unpacked from `gen_kwargs` as given in `_split_generators`
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def _generate_examples(self, file):
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print("Log at generating examples stage")
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key = 0
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with open(file, "rt") as f:
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fasta_sequences = parse_fasta(f)
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